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View Structure Prediction Details

Protein: CE30142
Organism: Caenorhabditis elegans
Length: 339 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30142.

Description E-value Query
Range
Subject
Range
gi|157768052 - gi|157768052|ref|XP_001675847.1| Hypothetical protein CBG02030 [Caenorhabditis briggsae AF16]
gi|187037767, gi... - gi|39591040|emb|CAE58820.1| Hypothetical protein CBG02030 [Caenorhabditis briggsae], gi|187037767|em...
191.0 [0..14] [311..49]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNYHLLTF FFSGSPMFSS PCHLSCASVF SLIGLGLVCF AVTTDNWVEV QVNRREIINS  60
   61 FKREPELSLR LQNAFGHNNI YFSRNYGLFN LCFPDT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPQDVGSFSK MGSPCIWSNE FMVPESKKEH FSNNELYRHY AAKATIIAYV VGIVFVVLSF  60
   61 IVGLIGCWNR SKKFIMSTGI LLILAGLSMS VAMLLWHYVA YSERYTLDVE PYYKSWEPIL 120
  121 KLTSRHNYGW SYIVSWIGIG FIVIGSAFMF FAYAAVKREE EDALTA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [263-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHGAYMMPNY YDKGAGTIVP YNYNTYAGYG GYPYYNQYNT AGYGYMTYGL ILFLFHLPTK  60
   61 NCCRFVYVCI AFVTVSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle