| Protein: | gar-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 614 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar-2.
| Description | E-value | Query Range |
Subject Range |
|
|
328.0 | [0..1] | [614..1] |
|
Region A: Residues: [1-223] |
1 11 21 31 41 51
| | | | | |
1 MAVASVLLAL FMLFLSIVTV IGNLAVLLSY YLDKNIRQPT NYFIFSLAIS DLLIGLEGIP 60
61 VYTAFYLNNN EWIWGDVLCD LWLSIDYIVC LASIYTVLGI TVDRYYSVKK PATYRNWRTP 120
121 GRVVLIIIFI WLVPSILFSV SIFGYGTFTG TGRILKETEC YVQFMTNPYL NMGMYISYYW 180
181 TTLFVMLYLY WGIYRAAKKL ALKSDQKTKR LALLTEMRRP EVS
|
| Detection Method: |  |
| Confidence: | 31.221849 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [224-614] |
1 11 21 31 41 51
| | | | | |
1 VRTSDAGNSS SDSPNDTSNS SKCFRTAPPT TTVQTTQTNV GTPPPVFRNH MTLHNNNMDF 60
61 TKDNEIVRPP TPPDDNTYSN PNFSMISEQL TNGFSRQEPS SVIERESTAP CVSPEPSHAS 120
121 LENEFNENHH AHFKPELSLP FIDADSVSSM VGHDDLRRAM SIRISRSVSM QGTARATPVI 180
181 EIVENLEEAL KICENLEELR EDENKNEEEK QKNGLENGGM NHVIIANDEQ QPSTSKESEQ 240
241 KEEMTPENHD PNEVKVPLIA VSRVESVKST AGGKVRRLIT QMRSHSIRSK RKANKNKEYK 300
301 SRSENRARKA LRTITFILGS FIILWTPFYV LATIYGFCET CKASPSFNTL YTISYYLCYM 360
361 NSPLNPFCYA MANQQFKKTL TRIFKGDFRR V
|
| Detection Method: | |
| Confidence: | 2.09 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
