| Protein: | gar-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 627 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar-2.
| Description | E-value | Query Range |
Subject Range |
|
|
333.0 | [0..1] | [627..1] |
|
Region A: Residues: [1-266] |
1 11 21 31 41 51
| | | | | |
1 MAVASVLLAL FMLFLSIVTV IGNLAVLLSY YLDKNIRQPT NYFIFSLAIS DLLIGLEGIP 60
61 VYTAFYLNNN EWIWGDVLCD LWLSIDYIVC LASIYTVLGI TVDRYYSVKK PATYRNWRTP 120
121 GRVVLIIIFI WLVPSILFSV SIFGYGTFTG TGRILKETEC YVQFMTNPYL NMGMYISYYW 180
181 TTLFVMLYLY WGIYRAAKKL ALKSDQKTKR LALLTEMRRP EVSVRTSDAG NSSSDSPNDT 240
241 SNSSKCFRTA PPTTTVQTTQ TNVGTP
|
| Detection Method: |  |
| Confidence: | 32.0 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [267-497] |
1 11 21 31 41 51
| | | | | |
1 PPVFRNHMTL HNNNMDFTKD NEIVRPPTPP DDNTYSNPNF SMISEQLTNG FSRQEPSSVI 60
61 ERESTAPCVS PEPSHASLEN EFNENHHAHF KPELSLPFID ADSVSSMVGH DDLRRAMSIR 120
121 ISRSVSMQGT ARATPVIEIV ENLEEALKIC ENLEELREDE NKNEEEKQKN GLENGGMNHV 180
181 IIANDEQQPS TSKESEQKEE MTPENHDPNE VKVPLIAVSR VESVKSTAGG K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [498-627] |
1 11 21 31 41 51
| | | | | |
1 VRRLITQMRS HSIRSKRKAN KNKSVLSALN FFQRKKEYKS RSENRARKAL RTITFILGSF 60
61 IILWTPFYVL ATIYGFCETC KASPSFNTLY TISYYLCYMN SPLNPFCYAM ANQQFKKTLT 120
121 RIFKGDFRRV
|
| Detection Method: | |
| Confidence: | 2.08 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
