| Protein: | smg-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 368 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for smg-4.
| Description | E-value | Query Range |
Subject Range |
|
|
143.0 | [0..44] | [364..200] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MTDSKDGHVK VVLRRLPKYM TEHEVLEQIS PLPEEVIGTY FHPANFSFDR CAYATLTVNF 60
61 SEYCDSMMEF ERRFDGYIFV DSRG
|
| Detection Method: |  |
| Confidence: | 30.09691 |
| Match: | 1uw4A |
| Description: | The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| nucleic acid binding | 2.39584426231036 | bayes_pls_golite062009 |
| binding | 1.71154446874967 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| protein binding | 0.426607329742248 | bayes_pls_golite062009 |
| 0.24850555804347 | bayes_pls_golite062009 | |
| hydrolase activity | 0.0430264134452161 | bayes_pls_golite062009 |
|
Region A: Residues: [85-368] |
1 11 21 31 41 51
| | | | | |
1 NDSAAVVEAA SNQNFAKCDR NRMKEDTRVG AILTDKYYLD FCKKLEEERA IPILTLEQQI 60
61 RKLNQPDDAR TQIDKMETPL VKYFFEKETG KRRDYDARRQ RRDEKRAEKR DKVDKFEKHK 120
121 NVLDILMKPS VPMASTSATT SKKDLKKEKP MTEKEKERWE KQDAKRKERN MIRKQKFLDE 180
181 KKKKHEEREQ DGPRVPRDKK KERLAKPPRP SPAKTVGEQQ GEDWIKKLTD PKSAPMKKKH 240
241 DLSVTTKLNK ETDTRPRTAP SSTKLPTRAT TSNHPKRPST APNH
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
