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View Structure Prediction Details

Protein: tba-9
Organism: Caenorhabditis elegans
Length: 456 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tba-9.

Description E-value Query
Range
Subject
Range
gi|115960583, gi... - gi|72057626|ref|XP_780117.1| PREDICTED: similar to tubulin, alpha 2 isoform 1 [Strongylocentrotus pu...
628.0 [0..6] [455..1]

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Predicted Domain #1
Region A:
Residues: [1-456]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNNRSREVI SIHVGQAGVQ MGNACWELYC LEHGIQPDGM INEEDSLGVD DDSFNTFFSE  60
   61 TMAGKHVPRA IMVDLEPTPI DEIRTGTYKT LFHPEQLLTG KEDAANNYAR GHYTIGKEII 120
  121 DVVMDRVRRL VENCRGLQGF LVFHSFGGGT GSGFTALLME RLSVDYGKKS KLEFCIYPAP 180
  181 QVSTSMVEPY NSILTTHTTL EHSDCSFMVD NEAIYDICRR NLDLARPTYT NLNRLIAQVI 240
  241 SSVTASLRFD GALNVDLTEF QTNLVPYPRI HFPLTTYAPI ISAEKAYHEQ MTVAEITQQC 300
  301 FEPGAQMVKC DPRRGKYMAC CLLYRGDVVP KDVNAAIASV KTKRSIQFVD WCPTGFKVGI 360
  361 NYQPPTVVPG ADLSKLQRAV CMLSNTTAIA EAWARLDHKF DLMYAKRAFV HWYVGEGMEE 420
  421 GEFSEAREDL AALEKDYEEV GLDAGEPDEE DDYSHY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 179.0
Match: 1z2bA
Description: Tubulin-colchicine-vinblastine: stathmin-like domain complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle