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View Structure Prediction Details

Protein: CE30529
Organism: Caenorhabditis elegans
Length: 594 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30529.

Description E-value Query
Range
Subject
Range
GRM1_RAT - Metabotropic glutamate receptor 1 OS=Rattus norvegicus GN=Grm1 PE=1 SV=1
441.0 [0..7] [587..360]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRPTTTTSS SSSYTPWYHH IFIIFLQYSL FHISPTFGAR NTVTEGGQPL TELLSSLDQP  60
   61 YPCGHVVEAE HFLSTAVALK FPRLIQLAHF FANHSKNFDP QLLDKSSFQQ IPPFDVSFAR 120
  121 RTHFYGLQLN CTGNNHRWLP RLVFVSHDPN NSNKKAYLTL QLDQFDVDMC SAVNCHTKCT 180
  181 WTVHGGLRVS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.0
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [191-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKACCNSDDV ILCRTDAERG RHMLLAFNSI CALICIALIP IVCYQRKRQH EARGWALMEL  60
   61 FLIGASILYS VLFLDFVAPP EYGCCVAVWL RQIGFSIFYG SIVLKIYRNL QEYRVRKAQH 120
  121 VSVREQDMLK YLAAMLALTI TGLMAWTVGS WGDTALWRTA WPQCLMQGWH VIWHGYELLF 180
  181 LLYAVRLCYK ARNSDWLERW QFTVAVCLEA VITLMANLIR YSIRNSGRAD TLFIVSFVHL 240
  241 QLTVSVNIVI IVAPKFYLSN GEPSRRSMTL GGHSGRAHPS LAKLRDN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [478-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILNGTIDFAE VPIADMNPED IRAELKRVYT QLRMYKLKNL YQDNPHISKK RGGKKWSDKN  60
   61 TKATRRISIP SCSPQTKRIE EDEKSDLTVE SSPHNIYLSN FKGVNVNSIE QHNSVRV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle