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View Structure Prediction Details

Protein: CE29782
Organism: Caenorhabditis elegans
Length: 470 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29782.

Description E-value Query
Range
Subject
Range
gi|90307566, gi|... - gi|90307566|gb|EAS37197.1| hypothetical protein CIMG_02551 [Coccidioides immitis RS], gi|119196353|r...
211.0 [0..11] [454..252]

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Predicted Domain #1
Region A:
Residues: [1-470]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLDTGTKN VIRLSVSFML LFFAYMSQEF IQEPLIEEEH RRGGNIDPHA GYHSFAILYF  60
   61 FFTIACLLIA PVVDLITAKW SMVVGFFTYI AFQLGFLELN SAYLYTTSAL LGIGAAFLWV 120
  121 GQGKYLTENC TSETIERNTA LMWLIFKFSL LGGGVFLYFM FQDQTMHELV LSGDFKIFVY 180
  181 VFCSISVVAA VNTAFLPAPA YVPEKREAVT LAGTLKVTFR LIRQTPMLLL AFIFLYTGFS 240
  241 RSFWIAIYPT CIKFTSKLGE NTTKLLAISG IATGIGQIVA GGIFSVLGKR VRILGKDMIV 300
  301 VIACVLHLIC FVLIYLFFPY DAPLRPTQNV GIFEPNAYIA IFCSGLLGFG DAIIQTQVYS 360
  361 FLCDGYSEES SHAFALFKFY SAISSTIAFF VSKYFTLAGH LLLYGAFAIL SAIAAVMAQK 420
  421 LYFHKTRHFF QENTKIHPAI ESEPIKIQIS ESGSTIESSE KTERKITDLN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.0
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.557257328314518 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle