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View Structure Prediction Details

Protein: ttll-5
Organism: Caenorhabditis elegans
Length: 677 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ttll-5.

Description E-value Query
Range
Subject
Range
gi|39592046, gi|... - gi|39592046|emb|CAE75266.1| Hypothetical protein CBG23229 [Caenorhabditis briggsae], gi|187021185|em...
gi|157762798 - gi|157762798|ref|XP_001673741.1| Hypothetical protein CBG23229 [Caenorhabditis briggsae AF16]
561.0 [0..1] [677..1]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIRPADET ERCPPTSTSD DQEAGDYLVS RNKKSRNSDY MLFSSDALVH IAHDAKVSEK  60
   61 YTWLGERLRL TFKMMRSDSR LIRTMCHSHG FMQCSSKNPS VNVIWMGAPV KSVRMREL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [119-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWQRLNQFP RSTELTKKDR LYENIERSKS IFGESFDFIP EFYVTPRENR KMENAFVRVA  60
   61 KEIAAAGGEL CFPGEFIVKP TNSRQGKGIF FANSMADIPA EGPLLVSRYL KDPYLVNNHK 120
  121 FDLRIYVAVT SFYPLVAYVY SEGLARLASR PYDTSASSAD SNEYVHLTNY SINKNSTSFV 180
  181 RNESMSSEDL GHKWTLGALL RYVENEGKDA KLLMLRIEDL IVKSLLSIQN SVATASRTNL 240
  241 RFACTNFELF GFDVLVDQAL KPWLLEVNLS PSLACDAPLD SLLKTRLIAD LLNLACVPLL 300
  301 DRKIIDSVTP ALRKSMNSQE 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.36
Match: 2qb5A
Description: No description for 2qb5A was found.

Predicted Domain #3
Region A:
Residues: [439-601]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SESSETDDLE LDPMCAKTLK RRPVGLKRSV LNKKIVSGST SLIPNNEKKF DQIVRKAELE  60
   61 DGRRGDFIRV FPRNGTWGMY SPVMEDLGNE DFDERLFDEV VTKKNTKNSS GSSKASSSSA 120
  121 SASSSSSSMH IEDLSDLFHE VMMQCDKYSS IADVPIEIRE IIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [602-677]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWYEEASEYT KKITQEGETY ACKLPVIRST ARLRTKSCAE FYEVRKVQLA KKKESEAMAS  60
   61 KENEPIVLQA VVAKRI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle