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View Structure Prediction Details

Protein: col-14
Organism: Caenorhabditis elegans
Length: 345 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-14.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
315.0 [0..50] [343..1443]

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Predicted Domain #1
Region A:
Residues: [1-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRARLRLI LLAKLVSLKM SDEKEKRSLR PVAFVAVVFS TVAITSCLIT FPLILHYIQT  60
   61 LESQVQLDLE FCQARARDMW KEMLDIETGG KKDSAKLANI VLNHRRLEKR DTLQDFWARR 120
  121 LHDQELRDQP VGYDNPSVGV ESFNSEGGGC CTCHRGPPGP AGDGGRDGAD GVDGTPGEIG 180
  181 PPGPPAPPGP DPHSLFPPQC PCEAPPGDGG PPGQPGPDGP PGAPGNAGED GKPGDQGPRG 240
  241 PPGIPGAPGQ PGRPGPPGEP GTYKTEVGPA GRAGAPGRPG PPGQPGPAGP PGENGKGGGQ 300
  301 GPSGLPGPPG QPGQNGAPGE VGQPGDNGAP GSCDHCPPAR LAPGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.69897
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle