YRC Public Data Repository - Protein Structure Prediction

Protein:	CE30433
Organism:	Caenorhabditis elegans
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30433.

Description	E-value	Query Range	Subject Range
gi\|50800573 - gi\|50800573\|ref\|XP_424134.1\| PREDICTED: hypothetical protein [Gallus gallus]	116.0	[0..1]	[107..1]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	115.0	[0..1]	[107..1]
gi\|56757219 - gi\|56757219\|gb\|AAW26781.1\| SJCHGC01207 protein [Schistosoma japonicum]	115.0	[0..1]	[107..1]
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	114.0	[0..5]	[107..10]
gi\|110765226, gi... - ref\|XP_392860.1\| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi\|110765226\|ref\|XP_00...	113.0	[0..1]	[107..1]
gi\|68397381 - gi\|68397381\|ref\|XP_686604.1\| PREDICTED: similar to 60S acidic ribosomal protein P2 [Danio rerio]	112.0	[0..1]	[107..158]
gi\|77416939 - gi\|77416939\|gb\|ABA81865.1\| unknown [Solanum tuberosum]	110.0	[0..1]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLGAYLLA TLGGNASPSA QDVLKVLEAG GLDCDMENAN SVVDALKGKT ISEVIAQGKV  60
   61 KLSSVPSGGS APAAAAPSGG AAPKAEEKKK EEPKEESDDD MGFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.920819
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits