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View Structure Prediction Details

Protein: CE30371
Organism: Caenorhabditis elegans
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30371.

Description E-value Query
Range
Subject
Range
gi|17131741, gi|... - gi|17230140|ref|NP_486688.1| peptide synthetase [Nostoc sp. PCC 7120], gi|17131741|dbj|BAB74347.1| p...
gi|25294032 - pir||AI2136 peptide synthetase [imported] - Nostoc sp. (strain PCC 7120)
306.0 [0..3] [312..460]

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Predicted Domain #1
Region A:
Residues: [1-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRNFGREFL EETSIFENKT CLIWRDREIS FKEFHEYIGK WKNVLDEQKT KTTNPLRIAL  60
   61 FCTNSPDILA IIVAGQLSGV TVIPLNPSYK KYEIDEYISK SIANFIIVSD DVDLDKFEER 120
  121 EVNLISELFT SNVTPSSTAS TPENQGVIVF FSSGTTGPPK QFEYTQRILC SQIDQIKAIR 180
  181 SDPRFFSPST DDICYGVLPF FHAGGLITIL SMIFSGCTVL INERWNEHEF LANCQNYKVS 240
  241 VLFLVPPVLN FFANHPLVSS YDLSALKTIY VGAAASPPEN FAKVAERLPE LENLIQCKFS 300
  301 YNVSFFIRRK CCT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.30103
Match: 1amuA
Description: Phenylalanine activating domain of gramicidin synthetase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.30539319136328 bayes_pls_golite062009
ligase activity 0.20580854487081 bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds 0.0874529293560995 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle