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View Structure Prediction Details

Protein: glb-6
Organism: Caenorhabditis elegans
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-6.

Description E-value Query
Range
Subject
Range
gi|157763704 - gi|157763704|ref|XP_001674195.1| Hypothetical protein CBG09369 [Caenorhabditis briggsae AF16]
gi|39593143, gi|... - gi|39593143|emb|CAE64612.1| Hypothetical protein CBG09369 [Caenorhabditis briggsae], gi|187031904|em...
353.0 [0..1] [389..1]

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Predicted Domain #1
Region A:
Residues: [1-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNQSTKSTH GTTRVSHSKS AHHNSSRVTS DVIPRSASAI SSHERFFSDS QSSSPPAVCP  60
   61 VSAPGKYRNF PGKDVPPICL TDEYNNSDDE VFCSTRTSKQ SPLATGCPRQ NLGSPGNRRS 120
  121 VDSTNSDLLE AVTPRSHISV KRTVSSGTEH APDHANMQKS SSLKFTRPGV RSETKETTPS 180
  181 TSSNPTMFPC IHQFLHLTQP QILFVRKTWN HARNQGALEP AISIFRNSFF KNPEIRQMIM 240
  241 FGTKNEGHER LKKHAQLFTV LMDDLIANLD SPSATVAGLR EAGEKHVWPT RNQYGCPFHA 300
  301 HLLDQFATAM IERTLEWGEK KDRTETTQRG WTKIVLFVTE QLKEGFQDEQ KRARRIKAQI 360
  361 KTSAGSSSFE ISTKTKQSDM KRFHTLDNM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.09691
Match: 1c7dA
Description: Hemoglobin, alpha-chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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