YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE29546
Organism: Caenorhabditis elegans
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29546.

Description E-value Query
Range
Subject
Range
CE37741 - status:Confirmed UniProt:Q5DX39 protein_id:AAV58892.1
724.0 [0..91] [501..1]

Back

Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKIDHDED DRDSSEYEEM DDDGEEAEID MEQHEMIYEK DIEPVEQFQQ EYISDQEPTS  60
   61 SNHEEIPVSM KIDYEEVYPH NAVQVDNAHE MVEAEKVYYE NEMEDLVYHE IYRIEGNQKQ 120
  121 ENYKRIRNIV GS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASCLVCQRS ESEKIRLFKW PKSEELKEQW LHFFRLPATV LQSATQEPYI CCYHFSADTF  60
   61 VMIDDRIFWK MTALPKYRQR RPGLAEPFP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 16.173925
Match: PF05485.3
Description: No description for PF05485.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [222-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WEPAVKHKME MMQSTDTTNN SSVVEYKIRY RMPFNKHKTR NVHQVAVMTP VAQPHLYYEF  60
   61 HFNRYGLNNT KFYACLSCRK AKTESGIRDV IRTIHLDGYK FLSNGDPFNG HHFACRPHNV 120
  121 YDYKSSWRPV PG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [354-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNGEANFLDE VVYVDEGGNS LEWHAVTRPG DNREVEAVHE KEDPPIMMYD GNFEDPITEE  60
   61 VIETNYVLDE PPVLYSQDPD RKPKPSKKSR IKCHLCLKTS FSSTQSLVDH LQKHILDEKE 120
  121 CKRCQKRISC DSRAICIRRG VCGSCFVV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle