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View Structure Prediction Details

Protein: ntl-2
Organism: Caenorhabditis elegans
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ntl-2.

Description E-value Query
Range
Subject
Range
ntl-2 - status:Confirmed UniProt:Q10923 protein_id:AAA80691.1
400.0 [0..4] [367..81]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLATSFPNLM RSDPSLTNPE FQIQNEDFPA LPGVGSGQTQ RSMLGDQLAN MLADDHQVDF  60
   61 AGPLGDCDPS RLSGISRNSQ EGPMHGIITH P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGEVTNIPAS MLDDQFGMAG LVTYLRTVDN PSIVSLALGY DLTTLGLNLN LSERKLYMNF  60
   61 GGPWADSPIR AHELDVKVPE EYMTHNHIRD KLPPLRLNKV SEDVLFYLFY NCPNEIYQVA 120
  121 AACELYAREW RFHKSEQVWL TRSQYGGVKE QTGNYEKGHY NVFDQMQWRK IPKELKLEYK 180
  181 ELEDR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 72.69897
Match: PF04153.9
Description: No description for PF04153.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [277-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKMPQSVSGQ PTPYKYFFQG PQFPSGPETG LMLQMHNLTL GTGGGGGGQI TPPAPAGLNG  60
   61 VMGGGGVGAA GIGGINVQPG AVPSAARATP N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle