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View Structure Prediction Details

Protein: col-144
Organism: Caenorhabditis elegans
Length: 306 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-144.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
253.0 [0..38] [305..1372]

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Predicted Domain #1
Region A:
Residues: [1-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVEKGTWL TVMEKLLVTA SATAATFAVF AVLFTVPSLY NTINEVHDQV LDGVSVFRVE  60
   61 TDSAWTEMMD IQITVTPPTK PRVNPFNSIF RQKRQTFSGL PAWCQCEPTK PTCPPGPPGP 120
  121 PGQPGAPGTP GAPGPKGDDN TATFAPLTCA PVSQDCVKCP EGPAGPAGPE GPAGPAGPDG 180
  181 QPGAPGNAGN PGSDGQPGAP GDNGQDGAPG QDGQPGAPGQ DGQRGSGAPG GPGAPGNAGP 240
  241 AGPAGQDGAP GQDGQPGPAG PAGQDGAPGN AGSDGQPGAP GGPGLPGNDA AYCACPPRSA 300
  301 VFVSRH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.09691
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle