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View Structure Prediction Details

Protein: CE30584
Organism: Caenorhabditis elegans
Length: 494 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30584.

Description E-value Query
Range
Subject
Range
gi|39594534, gi|... - gi|39594534|emb|CAE72112.1| Hypothetical protein CBG19205 [Caenorhabditis briggsae], gi|187024451|em...
gi|157764460 - gi|157764460|ref|XP_001674573.1| Hypothetical protein CBG19205 [Caenorhabditis briggsae AF16]
375.0 [0..1] [494..1]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTATAMLSG ASSTFAGVVG DFDQSSVLWA LIVGIILAFL LGAGMGANDV SNAFGTSVGS  60
   61 GVLTIIQAYI LASIFETLGS VLVGWSVVDT MRKGVVDISQ YENTPKEFLL GQIAVLGGCS 120
  121 AWLLIATVLH MPVSTTHSLV GATIGFSVVL RGFNGIQWMA IVKIVCSWFI SPVLSGIISS 180
  181 IIYMIVDHTV LRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [194-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANPLKNGLRA LPVFYFVCMA FNALMVFWDG SKLLHFDEIP VWGIVIIVLG VGTIAAAFAN  60
   61 FVMKPRIRAK IQDSEAPPTP PMFSDVESAR GSAELEEFTE GSVTNQQKTM STPGKIRKFF 120
  121 TWLLPDRTRS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [324-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSRSITQLFS TIQVFTACFA GFAHGANDVS NAVAPLAAII SVYRTKSVEQ KEAVPIYVLL  60
   61 YGVLAICIGL WTFGHYVIKT VGTKMSEINP ASGFTIEFGA AMTSLVASKL GLPISTTHCL 120
  121 VGSVVAVGAL RSEDGVKWST FRNIFMSWVI TLPVSGLISA GIMLIIKWAA L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle