| Protein: | nhr-88 |
| Organism: | Caenorhabditis elegans |
| Length: | 235 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-88.
| Description | E-value | Query Range |
Subject Range |
|
|
177.0 | [0..29] | [233..129] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MFAPSTVYTY GHHGSGTDED DGQQVMPGMD NGDGQCMVCG DRSAGKHYGV MACYGCKGFF 60
61 RRTIRSQQTY TCRFTQKCAI DKDQRNACRY CRFQRCLTVG MEPEAIRPDR DVIGKQKNPR 120
121 KKKMKSDTN
|
| Detection Method: |  |
| Confidence: | 21.0 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [130-235] |
1 11 21 31 41 51
| | | | | |
1 SGSIDASLPS PNGCDSPVSN NEDVILSFLL DVEDQATCGN NHITMPIGIS MMMKNDPDFD 60
61 VSTLFHSQYV RNQESFPMFR LCSQADLAKY AAGNNGRLIR NQIVFL
|
| Detection Method: | |
| Confidence: | 7.045757 |
| Match: | 1k4wA |
| Description: | Orphan nuclear receptor ROR-beta |
Matching Structure (courtesy of the PDB): |
|
