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View Structure Prediction Details

Protein: cps-6
Organism: Caenorhabditis elegans
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cps-6.

Description E-value Query
Range
Subject
Range
gi|7497276 - gi|7497276|pir||T28787 hypothetical protein C41D11.5 - Caenorhabditis elegans
329.0 [0..1] [308..446]

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Predicted Domain #1
Region A:
Residues: [1-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGKVAGTAA IAGISFLAGK YSNDDLPIFR NVQSATNVPM NQIQVSEPMT VKPASLNADA  60
   61 MGPSRSAEIM KHGYPGFTNV RTYEDFVLSY DYKTRTAHWV CEHLTPERLK HAEGVDRKLC 120
  121 EFKPDITFPQ KFLSQNTDYK CSGFDRGHLA AAGNHRKSQL AVDQTFYLSN MSPQVGRGFN 180
  181 RDKWNDLEMH CRRVAKKMIN SYIITGPLYL PKLEGDGKKY IKYQVIGDNN VAVPTHFFKV 240
  241 ALFEVTPGKF ELESYILPNA VIEDTVEISK FHVPLDAVER SAGLEIFARL DPKSIVKENG 300
  301 AKKGGLLW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.522879
Match: 1zm8A
Description: Apo Crystal structure of Nuclease A from Anabaena sp.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle