YRC Public Data Repository - Protein Structure Prediction

Protein:	CE29454
Organism:	Caenorhabditis elegans
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29454.

Description	E-value	Query Range	Subject Range
gi\|224098594 - gi\|224098594\|ref\|XP_002187809.1\| PREDICTED: similar to phosphoribosyl pyrophosphate synthetase 1 iso... gi\|50745642 - gi\|50745642\|ref\|XP_420181.1\| PREDICTED: hypothetical protein [Gallus gallus] gi\|542151400\|ref... - PREDICTED: ribose-phosphate pyrophosphokinase 1 isoform X2 [Zonotrichia albicollis]	381.0	[0..1]	[317..1]

Back

Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTVFSGSS HPDLSTRICE RLQLEVSKAS LKKFSNKETN VEIGESVRGE DVYIIQSAAG  60
   61 EINDNLMELL IMINACKIAS SCRVAAVIPA FPYARQDKKD KSRAPISAKL VANMLSVAGA 120
  121 DHIITMDLHA SQIQGFFDIP VDNLYAEPAI LKYIKESIPN WQTSVIVSPD AGGAKRVTSI 180
  181 ADRLNVDFAL IHKESKRANE VEKMTLVGSV EGKVAILVDD MADTCGTICM AADKLVEAGA 240
  241 DKVYAFCVHG IFSGPALTRL NASKFEAVVV TNTIPQDENM KKCSKIQCID ISMILAEAIR 300
  301 RTHNGESVSY LFSHVPIC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	2h06A
Description:	No description for 2h06A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits