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View Structure Prediction Details

Protein: ttll-11
Organism: Caenorhabditis elegans
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ttll-11.

Description E-value Query
Range
Subject
Range
ttll-11 - status:Partially_confirmed UniProt:Q95YA2 protein_id:AAM98008.2
603.0 [0..1] [535..173]

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Predicted Domain #1
Region A:
Residues: [1-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKIVTSPQS RVNKFPGMTE LAKKISLTHS ISSMQKLFPD EYAFYPNSWF LPAHLADFHA  60
   61 FYRKAQALGK TEMWFIVKPD EGAQGTGIYL INSPNQIRNV DQRQLVQEYV ADPLLMNDKL 120
  121 KFDFRVYGVI KSINPLSIYV AREGMARFCT EKYEKPDSSN FKNLYAHLTN YSLNKANEAY 180
  181 VHSNTLQDQT RGSKRLLSTV FHQLESRGVK TKRLWHDIKL ILVKTTLAML PEIMLHYEHH 240
  241 FYDSTGPQCF QIMGFDVMIR EDGTPILLEV NAAPSLTADH IVPHPGRTLL EGGQRVRSIV 300
  301 DEVIKIPLVR DTLLLV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.11
Match: 2qb5A
Description: No description for 2qb5A was found.

Predicted Domain #2
Region A:
Residues: [317-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGLMEEEYQN NSLKGETKSL DDMQTIKQRR KPHLSEIFPT RYGAHSGHLL FLDKAMYIYM  60
   61 QFVQLRSNVN ITNAGLKQFV RKCNLIDIIP VVHVDAKVSE INYYFTGEKR TNGNGLPFHA 120
  121 FLMFLFFIAE KKFVLENDLL SKVQRLLSFC DMSLRRYGVR SARLRRAEVD STIGNVEIYM 180
  181 LPSRMARNRS GTNGRKQNFT DDNNNPNSFA HLPKINERL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle