| Protein: | hrp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 308 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hrp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
187.0 | [0..1] | [303..207] |
|
Region A: Residues: [1-156] |
1 11 21 31 41 51
| | | | | |
1 MREFYSQFGE ITDIIVMRDP TTKRSRGFGF VTFSGKTEVD AAMKQRPHII DGKTVDPKRA 60
61 VPRDDKNRSE SNVSTKRLYV SGVREDHTED MLTEYFTKYG TVTKSEIILD KATQKPRGFG 120
121 FVTFDDHDSV DQCVLQKSHM VNGHRCDVRK GLSKDE
|
| Detection Method: |  |
| Confidence: | 41.69897 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [157-308] |
1 11 21 31 41 51
| | | | | |
1 MSKAQMNRDR ETRGGRSRDG QRGGYNGGGG GGGGWGGPAQ RGGPGAYGGP GGGGQGGYGG 60
61 DYGGGWGQQG GGGQGGWGGP QQQQGGGGWG QQGGGGQGGW GGPQQQQQGG WGGPQQGGGG 120
121 GGWGGQGQQQ GGWGGQSGAQ QWAHAQGGNR NY
|
| Detection Method: | |
| Confidence: | 4.221849 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
