YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE29283
Organism: Caenorhabditis elegans
Length: 521 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29283.

Description E-value Query
Range
Subject
Range
gi|42781669, gi|... - gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Baci...
339.0 [0..3] [501..22]

Back

Predicted Domain #1
Region A:
Residues: [1-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIISSIFAP TRGFHSRSTW ILLPTTSSTA CGANQLRMSS EKAVPCYEES VRLLNGLQSN  60
   61 AATIKKLRVQ RENLQAINLP QCRKYLESLN ISAEDLNALN IIHVSGTKGK GSACAFVESI 120
  121 LRSQGLRTGF YSSPHLVHVR ERIQVDGQPV SEQMFAEEFF HVYDIIKREH SDNMPAYFKF 180
  181 LTLLAFRIFV KLNVQVMILE VGIGGEYDCT NVVEKPKVCG VTTLDYDHMS ILGNKLSEIA 240
  241 WHKAGIFKES VPAFYSPTTT EAEEVLIARA ISKHVPLFQT PPVSAYQFAR DISPGIRGAH 300
  301 QFSNVSMALQ LVRAWAEKCG FPLPGVPLST DTSGFNVPLW MCDAIESCRW PGRSQIVSTD 360
  361 RNVTYLLDGA HTPKSMEACS EWAAEEIVNL KKENVKKILL FQCTADRCPS TLIKYLKPLG 420
  421 ISQIVSCPTQ LHSSIDKSAD SANLNASRDE QAEKANQCVQ AWKESLDQPE SVTEDQMKVF 480
  481 DCISSAYKFI ESQAASQEIL VLVTGSLHLV GGVLNLAGKG K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.221849
Match: 1w78A
Description: E.coli FolC in complex with DHPP and ADP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle