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View Structure Prediction Details

Protein: CE29259
Organism: Caenorhabditis elegans
Length: 582 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29259.

Description E-value Query
Range
Subject
Range
CE01237 - status:Confirmed UniProt:Q19275 protein_id:AAA50697.1
933.0 [0..1] [582..1]

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Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNDLPLLPP KNQHKHLDKT MISLPSDFRH LAHVGPMGSS EIENLRTSDN VIDTVNESYY  60
   61 IRPSSSNSTL RSQRKEKDRV GLDDAFPSAS KSEEEVEVVR GYENQPTSHQ YINIAPPRPS 120
  121 KKNYKAPAPP TPPPQNSKPN LIFNAQDDEE ETSEISEQPV VFRSISHTSN ISTHIAPPPK 180
  181 IQTADRIVAP KPNSLVIERP GDLGGAFSFG LDDCIPIVKS TPPLNTLSPL HRPLAI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [237-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKNQEETPIL SPASPPDDSN YMSTIRSTSV QGRKILDELD DWLDDLDDLD RDQLSTISTD  60
   61 ESGYPTLALE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [307-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDRAFMKHLV EKYELGVAPE TIRLRKKKGP APKAPSLPPD LSSPTFQAPG FIPAFSARPV  60
   61 SMPPNRPPPS YEAPSFDAPE APGTVLINGR ALTKQNALDL RSSDESGVPP AIARFLYDKR 120
  121 IKSATMPMSI GRMTSSSGNT DVSTTSSRSN ADTVSSILST VGEDDDVEVL KRDREVEEEF 180
  181 VPPVPKPRSR KTVSTEPLKE EEEENVEEEI KGENVIGEEF QVVGDTKIND EQEDRVEATK 240
  241 DKINDAFIML PPPSAAAMIP SDSESEDDDN FIITRF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.93
Match: 1q3iA
Description: Crystal Structure of Na,K-ATPase N-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.35391189722448 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle