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View Structure Prediction Details

Protein: CE29243
Organism: Caenorhabditis elegans
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29243.

Description E-value Query
Range
Subject
Range
gi|39579415, gi|... - gi|39579415|emb|CAE56721.1| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi|187040086|em...
238.0 [0..1] [500..23]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFVELMYRD LPWASGAEAG ILSSDASSSI LLPASGTEAI SQLSKNSNIK QPGTWLYRID  60
   61 KAQLMPCAQP IQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 19.958607
Match: PF06119.5
Description: No description for PF06119.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPPYCDRLLS TAPRLPSKLL EEKKEGLTLP SPGAFLVDQP SETIVPTLVR GGGTVTRGRN  60
   61 VLTVTTSPIG NQQRQQTTKA VTRPRPNFSS TPHRPIVSLS DEDFELGPDA FEVT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [187-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPPFVTVQPE LFRPNQRNGV QKSTQRPLPD FSIRTPLKEE ATTSVPREKT SSAAPAHSPI  60
   61 EEMSENEESP FEAGSFDGEA VKFNEELEAI DKALQTTKKQ RPELSVTPQP EDLSGDARVI 120
  121 ETTEEDEEEA EISTETTTEM SSTTTTTKAH TTTTTMMIPT EAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [350-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSIFVFTTTQ KPRAQSTTQK RIIVQQPSIV VNSQPPKQRN DNQPTVNVGH AEEQSPRLAI  60
   61 LLPVMIILAW LVILVCIGAV VCCKRRNSRE SSQLRAMYGA AYGVRPTAYE SKRKESTYED 120
  121 HLERAARLSG QPALSGQQKT TSESTLIECV RL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle