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View Structure Prediction Details

Protein: CE29179
Organism: Caenorhabditis elegans
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29179.

Description E-value Query
Range
Subject
Range
gi|187027768, gi... - gi|39597763|emb|CAE68455.1| Hypothetical protein CBG14245 [Caenorhabditis briggsae], gi|187027768|em...
gi|157769225 - gi|157769225|ref|XP_001676433.1| Hypothetical protein CBG14245 [Caenorhabditis briggsae AF16]
420.0 [0..1] [356..1]

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Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIVPRILG FVLFVLGAAI FLTEVMHSYH RFVKQSEEYS ISNSNTDDAP TKKKQMKAFF  60
   61 SLYHNMDELK AQNSDVVQPR VLKGTAREFC NNTDHCIRPF LNHETRYRVA PDYKMAHCVV 120
  121 HKSMSTVITG IWCYLFNRNR FVRVDKQMNM SEWDK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [156-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESLCRGDNTF RHLKSLQKKY NASEMTGWSL SMITRDPIDR FISGYVDRCI RVAEGPSPCN  60
   61 GCDKNMTCFI LSEYERFKKQ AHKGVLTNTF EDRHFYPQNW RC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [258-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIKTMRNKYE FIRYSSDASK ELMEDLFKIA RRQGIPEKEL EYIENELTKN RKTSHTTAYS  60
   61 PAREFFQRRL RESPLLMEYV VRMFYHDFVI LNYPLPEGF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle