| Protein: | lsm-8 |
| Organism: | Caenorhabditis elegans |
| Length: | 98 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lsm-8.
| Description | E-value | Query Range |
Subject Range |
|
|
114.0 | [0..1] | [95..233] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MTSTLDAYMN RMVNVVTGDG RVIVGLLKGF DQLINLVIED AHERSYSETE GVLTTPLGLY 60
61 IIRGENVAII GEIDEELDKR VDLENVKAAP LAPIWIPQ
|
| Detection Method: |  |
| Confidence: | 17.045757 |
| Match: | 1d3bB |
| Description: | B core SNRNP protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 9.36615441177233 | bayes_pls_golite062009 | |
| RNA binding | 5.81718051012035 | bayes_pls_golite062009 |
| nucleic acid binding | 2.69031444148163 | bayes_pls_golite062009 |
| mRNA binding | 2.57166143288861 | bayes_pls_golite062009 |
| binding | 2.04681172391952 | bayes_pls_golite062009 |
| protein binding | 0.187097443004706 | bayes_pls_golite062009 |
