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View Structure Prediction Details

Protein: cit-1.2
Organism: Caenorhabditis elegans
Length: 555 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cit-1.2.

Description E-value Query
Range
Subject
Range
gi|630622 - gi|630622|pir||S44814 F44B9.3 protein - Caenorhabditis elegans
275.0 [0..1] [555..1]

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Predicted Domain #1
Region A:
Residues: [1-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSNKLIAE KNGSRYGRMI HPWLRKKQDM LADTPSRREG MTYEEELSKR QQGGVFIFDI  60
   61 AMQLTHGKGE HGLSGVAATL FNRFFNVHSL KRCDFRDVAA ACVFLAGKNE DAPKKLKYVV 120
  121 TQLWQFKYPH NKQFQSEQHF LDQCNVVTLI EDVLLKTISF DINVDLPHQY VLKLMRDVEK 180
  181 GRNVYKDMVK TAYYMATDVL IITDWSVRYS CASIATACVN IAAFFHNINM DDIVPFELSD 240
  241 RWYRLEDQSM TREEVEAMTK EFLDIFSRNP QFHIGSLKKI DPLGKVKIVG MPPQVSSTVT 300
  301 PSGSSSNLKK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.69897
Match: 2i53A
Description: No description for 2i53A was found.

Predicted functions:

Term Confidence Notes
binding 0.882381275214425 bayes_pls_golite062009
protein binding 0.65276271768935 bayes_pls_golite062009
kinase regulator activity 0.14915355683092 bayes_pls_golite062009
protein kinase regulator activity 0.13161125048906 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [311-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDLESYKGRP KPLSNSSDSP STRPSFLPDV KNQKVVEQEL MEQRMKEAAQ QKIHR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [366-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGHRPSSSSH PLHHHSTSSS ASNNSNHQNR SSSGLSAHQH QKPYNEDSRS AKRSMMYEET  60
   61 NSSKKPRIDY KMSFVASSST TIATMHNDHF SQTTHQQNIS TYARGVNEMM LNQVAPPPLM 120
  121 SVSAQPSTYQ KMCMEYQRNP ADSRHTMSST QQISPPDEPS PPVSQILLPP PPPPPILPPR 180
  181 LDEMEEGELV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle