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View Structure Prediction Details

Protein: CE29034
Organism: Caenorhabditis elegans
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29034.

Description E-value Query
Range
Subject
Range
gi|157745309 - gi|157745309|ref|XP_001667751.1| Hypothetical protein CBG22275 [Caenorhabditis briggsae AF16]
gi|187022135, gi... - gi|39589492|emb|CAE74521.1| Hypothetical protein CBG22275 [Caenorhabditis briggsae], gi|187022135|em...
586.0 [0..17] [477..19]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRRRVPAP PPQAPSVPAS IPRASGVTLS VHPIWPDIQF TQGELFFECT LFLYSVLALF  60
   61 LQYLNIYKTL WWLPKSYWHY SLKFHLINPY FLSCVGLLLG WRVTVCFWKT ITEVIATISA 120
  121 NQSQFIQSSL MIVEYAAIKT PVMTLIITSF LFSFNRVCHD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPSRSVLWFL FPILFYAFIF RSEIIGWLGR FREQIGKWRR REIEFSDVCE RLSESPPAQI  60
   61 DLESVLHMCS DSPAQIREEI QVLIDDLVLR VKKSIFAGVS TAFLSIMLPC IFVPFKTSQG 120
  121 IP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [283-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKILINEVWE CQLAIVVGLT AFSLYVAYLS PLNYLDLLHR AAIHLGSWHQ IEGPRIGHTG  60
   61 SMSSAPTPWS EFCLYNDGET VQMPDGRCYR AKSSNSIRTV AAHPESSRHN TFFK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [397-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLRKPNNLIN IMCSFEFLLI FIQFWMLVLT NDWQHIVTFV LLMFANYLLF AKLFKDKIIL  60
   61 SRIYEPSQED LLLMHQLQQE R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle