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View Structure Prediction Details

Protein: coq-5
Organism: Caenorhabditis elegans
Length: 285 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq-5.

Description E-value Query
Range
Subject
Range
UBIE_PSEAE - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pseudomonas aeruginosa GN=ubiE PE=3 SV...
UBIE_PSEA8 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas aeruginosa (strain LESB5...
gi|254244055, gi... - gi|84323851|ref|ZP_00971918.1| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [P...
gi|126170161, gi... - gi|84317690|ref|ZP_00966128.1| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [P...
UBIE_PSEAB - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas aeruginosa (strain UCBPP...
UBIE_PSEAE - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas aeruginosa (strain ATCC ...
257.0 [0..28] [283..1]

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Predicted Domain #1
Region A:
Residues: [1-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGATNLFKS MRKPTNVGNF RQFSVNQVNS DNKRSEPGKK THFGFTDVDE AEKEQKVHHV  60
   61 FANVAKKYDL MNDAMSMGVH RLWKDYYVGG LQVPYNAKCL DMAGGTGDIA FRILRHSPTA 120
  121 KVTVSDINQP MLDVGKKRAE KERDIQPSRA EWVCANAEQM PFESNTYDLF TMSFGIRNCT 180
  181 HPEKVVREAF RVLKPGGQLA ILEFSEVNSA LKPIYDAYSF NVIPVLGEIL ASDRASYQYL 240
  241 VESIRKFPNQ DEFARIIREE GFSNVRYENL TFGVCSIHKG MKPRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 1qzzA
Description: Crystal structure of aclacinomycin-10-hydroxylase (RdmB) in complex with S-adensyl-L-methionine (SAM)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.25333584501255 bayes_pls_golite062009
transferase activity 1.07321114919891 bayes_pls_golite062009
oxidoreductase activity 0.964067575431689 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.612108481676679 bayes_pls_golite062009
methyltransferase activity 0.606225212585352 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.14147363365106 bayes_pls_golite062009
binding 0.109975487409217 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle