YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: mod-5
Organism: Caenorhabditis elegans
Length: 671 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mod-5.

Description E-value Query
Range
Subject
Range
gi|32563761, gi|... - ref|NP_491095.2| MODulation of locomotion defective MOD-5, serotonin reuptake transporter (75.0 kD) ...
559.0 [0..1] [671..1]

Back

Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRWHSVRRK QHQQLQAELS SGAASMLSAP ESRRVSRSMS VKAPTASEYM PLSVADKPLT  60
   61 LTVSTSHSID PNEPIAALGG LTPTKEGRVA ALR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-671]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRSSMVRDKW ATKMEFLLAV VGYAVDLGNI WRFPSVCYKH GGGAFLIPYF IMLMIGGLPM  60
   61 FYMELVLGQF HRSGCVSIWR KVCPLFRGIG YGICCICTFI AIFYNAIIAQ AVYFAIVSLS 120
  121 KIWDSEVPWA SCGNPWNTPR CSDDLNVTIS RNGTPLTTPS EEYYLYKVLE VQKSTGFDDL 180
  181 GGVKTSMAVC LLAVFIMVYF ALWKGPQSSG KIVWVTATAP YIILSILLIR GLLLPGAKNG 240
  241 LYYYVTPDFE KLKDPAVWSA AATQIFFSLG PGFGVLLALS SYNDFNNNCY RDAVTTSIIN 300
  301 CATSFFSGCV VFSTLGYMSL LTNKPINEVV GEHDASLIFI VYPQALATMD YSCFWSFIFF 360
  361 VMLITLGIDS TFAGIEAFIT GFCDESRFLS KNRKWFVLVI CIIYYFLSFP AISYGGQFVI 420
  421 PFLDEYGVSL SVLFIVTCEM IAVCWFYGVD QFSKDIRAML GFYPGIYWRV CWTCSPVFIS 480
  481 VIFIMTVYNS SFKPIQMASY TFPWWSVILG WFLRLLSVLA IPVFAIIYLL SGTGTLYERF 540
  541 RWAITPQQRR NSATSLAADP TQIIDSSLLD PIHTLTPV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.69897
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle