YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE28945
Organism: Caenorhabditis elegans
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28945.

Description E-value Query
Range
Subject
Range
gi|68385220 - gi|68385220|ref|XP_692457.1| PREDICTED: similar to alpha 3 type VI collagen isoform 1 precursor [Dan...
149.0 [0..13] [142..1544]

Back

Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKVLLAIGL LCLIDVSAQF RAECEHPLHF GVQQCTNTSV VRYHFDMESK KCLAFKYTGC  60
   61 GGNENNFKDY SACSNFCIPM DYFTCPGGSD SVAGKNGKSH CGGMEQLKCD GPNTFCLNGP 120
  121 FTGICCDTRI RDKIDADYAK ECGPGKLKHQ IDIGGVKIPM FGKTCDSTFC PAYTKCHQGN 180
  181 YFAYCCA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.0
Match: 1bikA
Description: X-RAY STRUCTURE OF BIKUNIN FROM THE HUMAN INTER-ALPHA-INHIBITOR COMPLEX
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle