YRC Public Data Repository - Protein Structure Prediction

Protein:	CE28933
Organism:	Caenorhabditis elegans
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28933.

Description	E-value	Query Range	Subject Range
gi\|7503205 - gi\|7503205\|pir\|\|T16328 hypothetical protein F41G3.6 - Caenorhabditis elegans	570.0	[0..1]	[296..279]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYFGTFNRN KGLFTESRDI MVYQQARDEE HKKRKEANLE LDSDSHVGMW LLCHPDNDLA  60
   61 IAMYTTMVRL AGELSLEVTH DDIIAWLGTA IRCHPSQLVP RGEAVSIRDK PTLPTDP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGGDWNTGVG ITQTCLLLRY LSQCSLDQLS IDERANVLFA ILRVFSDSDE VAASPDAQKF  60
   61 VRRIYSSGSR YDLIDALAAI FFQLSNDIAT MADAVRTLWS ITEDEPLVMR LTVEILMCLC 120
  121 QRSEVVANLP EFKLGDQMYC KQVKMIILDL TSDAHEQVPE LHQKDELSNL VNEVFNLKR