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View Structure Prediction Details

Protein: clc-2
Organism: Caenorhabditis elegans
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clc-2.

Description E-value Query
Range
Subject
Range
gi|54020932, gi|... - gi|54020932|ref|NP_001005709.1| claudin 3 [Xenopus (Silurana) tropicalis], gi|49523224|gb|AAH75291.1...
184.0 [0..1] [214..1]

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Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAVSYAIL VLTIIAFLLT AAALCTPAWQ VVYAREIRQW VQSGLWLSCQ TRPNGMYSCT  60
   61 YTFSHDDFNT YFSDEVSGFR TPSFYPWQRT LFHIYLISQA FAMLSLISFC VSVSHKESKM 120
  121 PNILRSVFLV LAAVIAFGCL IAFAVYSYMV EYRFFHVSVS GIYEKHRGYS WYIALTGAFV 180
  181 YLVAIILSVV HVLLQARNSN TTMSRQNINS SLQSDFFEYQ YHPNRSMESF EDRFAMRTLP 240
  241 PVPRQEKKTT VF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 106.05061
Match: PF07062.3
Description: No description for PF07062.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle