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View Structure Prediction Details

Protein: CE28869
Organism: Caenorhabditis elegans
Length: 169 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28869.

Description E-value Query
Range
Subject
Range
gi|114654177 - gi|114654177|ref|XP_510096.2| PREDICTED: alkylated DNA repair protein alkB homolog [Pan troglodytes]
144.0 [0..11] [168..179]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSSFCFDF YSEKNKNQFF KMKIPGNLPI CRFAESREIN LPNGRYYLKI LQKIRFFLSE  60
   61 RSAAPLISMS LGQTAIYLSG TIDLSSEPPI PIWLRNGDFL IMHGDQRLVY HAIPCIGSIP 120
  121 KRRGNRGSMM DEDQEHFEPP RGNDDVDQSI IDYLNSSRVN FTIRQVNPN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.39794
Match: 2fd8A
Description: Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.391261742890951 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle