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View Structure Prediction Details

Protein: CE28826
Organism: Caenorhabditis elegans
Length: 468 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28826.

Description E-value Query
Range
Subject
Range
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb...
SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...
166.0 [0..6] [468..102]

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Predicted Domain #1
Region A:
Residues: [1-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSLLSIGL SQFGLSVLQT LFMFYYVKVY INQFHVNTKW FNIAQTLFMV WNAINDPLFG  60
   61 YLQEIRGSWL TNRLLVIKTL SPFLVGSFVF MWIPWNTEGS DLEGLHLVLS LFLYDAFFSA 120
  121 ISVAWGALFA DTTQNQSLIR VKALKYSQIA ILLSVFSIAV TEKLSNSLKN FPIFQGICFF 180
  181 VAILSFICLW WGGHFGKITN NRQEDKEQGD REVLIEKEQE KEKEHQLTFH ENVQNSIHLT 240
  241 KQILSQRQFL AIVITNFFHT ARSIAHMNFA SIITEILIPQ DILPSGSIRL SLFFMLLTLG 300
  301 PQIILIVNEK LIANAGAIRV ISVSYIVSFL SGFMIVASGN PYSIMLFMLI DCVTVHTIAP 360
  361 LFNIIISDFV DDDARKNSRS SGIPSIVFSL NALFVKPAQS VAPVIIVHLL NQSGYQDYLK 420
  421 SKVLSEDLKN TILLILFMTP VIIGGIQYAV MKSMFSFRKQ NIRTTHVI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.557257328314518 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle