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View Structure Prediction Details

Protein: CE28801
Organism: Caenorhabditis elegans
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28801.

Description E-value Query
Range
Subject
Range
SYN_PSEHT - Asparagine--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=asnS PE=3 SV=1
382.0 [0..1] [413..6]

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Predicted Domain #1
Region A:
Residues: [1-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILQNYRKF STKTLDGWAK SVQKSGKNVF VKIDKGRAGE PIQLVANKEI GQEIRVGSAI  60
   61 RATGSLEHSR GAQQEMEFVA EQLKVVGNDE NPRYDDLSPD NLRKKTHLRA RNSKFAALLR 120
  121 ARSAIFRETH EFFMSRDFIH IDTPKLTRND CEGGGEVFDV VTTTSTEAGD GGLKEEPMFL 180
  181 SVSSQLHLEA MVSRLQRVYI LGPSFRAERQ QSHAHLSEFH MLEAEVAFVE TIDEMCTLVE 240
  241 SYIQHMISYL NSSKLEPETA IIGSKIPISN IKFPRIRYDE AVHLLALKGS KVTAKSGFSK 300
  301 KNELDLVKLH DDHPIFVTHY PVGQKPFYMA RDGQLTLSFD LLVPGIGELA GGSLREQSAE 360
  361 ELQRRGCGID WYLEMRRRGQ PPTGGFGIGF ERMLQYLIFF RKSLNLQIGK KTFCSKKSIF 420
  421 VEISFFHKFL KFWIFFFQFS KSSEIFDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.0
Match: 1b8aA
Description: Aspartyl-tRNA synthetase (AspRS)
Matching Structure (courtesy of the PDB):

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