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View Structure Prediction Details

Protein: CE28791
Organism: Caenorhabditis elegans
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28791.

Description E-value Query
Range
Subject
Range
gi|157748535 - gi|157748535|ref|XP_001669362.1| Hypothetical protein CBG08757 [Caenorhabditis briggsae AF16]
gi|187032421, gi... - gi|39580755|emb|CAE64141.1| Hypothetical protein CBG08757 [Caenorhabditis briggsae], gi|187032421|em...
260.0 [0..1] [362..1]

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Predicted Domain #1
Region A:
Residues: [1-58]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSVSRDDF IWTLTEQPHM SRREEIVKKY PEVKKLFGVD PSLKYVVSSL VIFQIFMC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [59-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WLLQDADWIL IILEAYFCGG IINHAMTLAI HDISHNTAFG NKYPLKNRFF GMWANLPIAV  60
   61 PISVSFKKYH VEHHRYLGED GLDTDVPTTF EAEFFTTAPR KLLWLALQPF FYGFRPLIIY 120
  121 KKAPTDMEIL NAIIQISFDL LILHFFGVKS LFYLLFGTII SMGLHPSAGH FISEHYAFKE 180
  181 DQETFSYYGL WNLCTFNVGY HVEHHDFPYI PGRDLPKLRA MAPEYYENL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [288-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKHTSMMQIL TEFVVNPAMG PYARLKRKPR VAQEFYGNYQ LFEYVEGFLH HIGVYRLQKF  60
   61 AVNVFDLNNN SKKLN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle