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View Structure Prediction Details

Protein: CE28711
Organism: Caenorhabditis elegans
Length: 739 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28711.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
211.0 [0..1] [670..1992]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISQILNAMS IQKGLISGTL DPETLISELL GSALPSELAS INMLHVQQGI EIGLNIPKLL  60
   61 RDAAGDENAK ARKAYEGYNA ILKEIDGMID VKNWSGKADF DKGIAELRKD YVKPKVLENL 120
  121 EKICQNLTSI LNSATLEADQ LSTALEALTS LSTSFNATSD IWMFHEYTST IQAVAPFLKT 180
  181 ARGVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #2
Region A:
Residues: [186-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHLKYKDNLN LTKKEEAAFN KYISIYTNSA VHMFLDLGPL IGKIFAPEGH NKSLSLPEFD  60
   61 KVLSDAWIRS VVNSDSLGKG LSRLSAF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [273-638]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSSLLRAQRR LNFTDVAGGV RSIIEMFNFD VFPGDDHMSA ADQECTPLEL RFRAISDLKM  60
   61 FIDEIEVEFN NLTMLAIKLS FFLSGNSDAG QDFLKIHREH ETVVIKKLNE TGQLKSLKAH 120
  121 LSMINQQLEL INTFPIHDIN VYARYAQLDI GWIYSQHKDE LEKYADYFNC LQNNAYLKYK 180
  181 ASLSIATKRI SDHVYNSTYQ NSFNNLLGVF KNSTSAVDDM FVMKRHMKAM KNFHTVETDA 240
  241 LGEFKDVESY AENLRLAVQG LEKLSDLVEK KDQLKYVIDN INVLIESVSV MDDVPHLYNL 300
  301 QKIVLLKSEF RMLHLSLEGF EEQATDSIES IVLEDYEQLF VQARSIPSIE GDFEAIGNSV 360
  361 GELARL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.154902
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [639-739]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTNVTVKEIL RNVNVSLNSL DLDFTSYRVH FANVALRELD VFFANFSKKF EKPEELDVRV  60
   61 EQKERRKAKN PNERERLDRI PWWFVFGCVT SILFGALFAL A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle