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View Structure Prediction Details

Protein: gck-1
Organism: Caenorhabditis elegans
Length: 651 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gck-1.

Description E-value Query
Range
Subject
Range
gck-1 - status:Partially_confirmed UniProt:Q6ABW4 protein_id:AAT81184.1
427.0 [0..21] [651..8]

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Predicted Domain #1
Region A:
Residues: [1-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPEVSPPKP AERRKVVKPI EDNSKLDPEV IFTKQERIGR GSFGEVYKGI DNRTGRVVAI  60
   61 KIIDLEQAED EIEDIQQEIQ VLSQCDSQYV TKYFGSFLKG SKLWIIMEYL GGGSALDLTK 120
  121 SGKLDESHIA VILREILKGL EYLHSERKIH RDIKAANVLV SEHGDVKVAD FGVAGQLTET 180
  181 VKKRITFVGS PFWMAPELIK QSSYDYKADI WSLGITAIEL ANGEPPHSDL HPMRVLFLIP 240
  241 KNPPPVLQGS QWSKPFKEFV EMCLNKDPEN RPSASTLLKH QFIKRAKKNS ILVDLIERAA 300
  301 EYRLRTGVSS DSDLDEDSDG GGGTSKWDYP TVRGPRVSAD DDGTVRQRTD RPRAQVDRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.0
Match: 1f3mC
Description: pak1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [360-524]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSGSPGGTI VRGSPQVAAV AEQLRNSSVG SSGYGSGGNS ASSQYATSSL PQSHTASSGG  60
   61 ATTITLGSPN GSPTSSLART QSMVSPSGQR SGSAQSWELE RGNRPMSERV SSQVSPSKYN 120
  121 QHRTSSSNGV QGGSGGRREY INGSGSGLNG NSSNQNHSEY SDAVR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [525-651]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRGPGGSGGR LDYRESHVPT SSQENLNHGR MYGYGAPPPS REANNVPMPR VKGALDCSLL  60
   61 PAIEHLSRTR HATAALDQLR HVFRDVEDSC PGICNELIEE LMQRIAVPQV SQSDLDAAIR 120
  121 RLTTPPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle