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View Structure Prediction Details

Protein: act-4
Organism: Caenorhabditis elegans
Length: 332 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for act-4.

Description E-value Query
Range
Subject
Range
gi|109489498 - gi|109489498|ref|XP_001076100.1| PREDICTED: similar to Actin, cytoplasmic 2 (Gamma-actin) [Rattus no...
517.0 [0..1] [332..353]

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Predicted Domain #1
Region A:
Residues: [1-332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGMGQKDSY VGDEAQSKRG ILTLKYPIEH GIVTNWDDME KIWHHTFYNE LRVAPEEHPV  60
   61 LLTEAPLNPK ANREKMTQIM FETFNTPAMY VAIQAVLSLY ASGRTTGVVL DSGDGVTHTV 120
  121 PIYEGYALPH AILRLDLAGR DLTDYLMKIL TERGYSFTTT AEREIVRDIK EKLCYVALDF 180
  181 EQEMATAASS SSLEKSYELP DGQVITVGNE RFRCPEALFQ PSFLGMESAG IHETSYNSIM 240
  241 KCDIDIRKDL YANTVLSGGT TMYPGIADRM QKEITALAPS TMKIKIIAPP ERKYSVWIGG 300
  301 SILASLSTFQ QMWISKQEYD ESGPSIVHRK CF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 145.0
Match: 1hluA
Description: Actin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle