YRC Public Data Repository - Protein Structure Prediction

Protein:	CE28615
Organism:	Caenorhabditis elegans
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28615.

Description	E-value	Query Range	Subject Range
gi\|39587591, gi\|... - gi\|39587591\|emb\|CAE58529.1\| Hypothetical protein CBG01684 [Caenorhabditis briggsae], gi\|187038023\|em... gi\|157757791 - gi\|157757791\|ref\|XP_001671239.1\| Hypothetical protein CBG01684 [Caenorhabditis briggsae AF16]	253.0	[0..7]	[152..102]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAPQIRPD YDTDCLWKPP TRSARVQKER TISMDSTDSE IGALGGRKFS TNEGARLGPA  60
   61 PTSPIDAQPR ARRMSISEML FGSSPKSFSW GMESNTTNTT TTSNSGGGDI GERKMSITDD 120
  121 PRFKDFMKHQ SKIIGDDGIS AAGFKRSNYM KD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits