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View Structure Prediction Details

Protein: CE28601
Organism: Caenorhabditis elegans
Length: 279 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28601.

Description E-value Query
Range
Subject
Range
gi|187025411, gi... - gi|39581701|emb|CAE71034.1| Hypothetical protein CBG17875 [Caenorhabditis briggsae], gi|187025411|em...
228.0 [0..3] [278..1]

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Predicted Domain #1
Region A:
Residues: [1-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLLLLCIS CIPLAYSHDG EPFDYLMFTT IYPTAVCRAD DDSVPESCEI PSGTPQWSIH  60
   61 GLWPNFENGS YPQNCRGTPR HFDENLIKSI EDRLVVVWPN LYPKKTIQSF WKHEYDKHGT 120
  121 CAQSEKLFES ELAYFTEVMK VFDSIDVAGG LKSVGPSEKP ITSSDLKNAL SGVTSGKTFQ 180
  181 FHCLRDKKTK QFLLGDIRLC LNKDLTIRDC PTDGKHPNRV SRFERSIGRN RRGPPLPSFQ 240
  241 PCPAEFIYLP EMSSISKSSD STSPSIFGRI WSAIKNIGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.0
Match: 1iybA
Description: Crystal Structure of the Nicotiana glutinosa Ribonuclease NW
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle