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View Structure Prediction Details

Protein: CE28526
Organism: Caenorhabditis elegans
Length: 577 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28526.

Description E-value Query
Range
Subject
Range
gi|8132324 - gi|8132324|gb|AAF73251.1|AF154121_1 sodium-dependent high-affinity dicarboxylate transporter [Homo s...
369.0 [0..10] [571..9]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILIINNTFD IDQKGFYFEK KVNLKFQLSN DKLWHRSLEG KCAFVILTMS CYWVAEVVPL  60
   61 AVTSFIPMIA LPFLGIVSIK EVAPKYFADT NIVFFNSLML SLAVEECQLH KRIALKMLTY 120
  121 VGTRPHWLMA GFMIITSFIS LWISDTACCA LMAPIAYALL EEIMIPKMRP EEKENEIEVM 180
  181 KIFDKEDPEE KEKKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDTSRLSVRD RGICKCMMLL VAHASLIGGT GTINSTGPNL IFRDNIEKNF PNEDHGISYL  60
   61 SWMAFAIPPM IFYMFSSWFI VQLQFLGPRH LMGMFREPTE TEKQEEEVAK RAVWKSYDQL 120
  121 GPMTWAEKST LVIFVLAVLS WVSSDPKVIP GWSDLFR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [353-577]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGYVTDSCSG LVAVFLLFIW PKKKPDFRIF RKDKSRPSVR QEPLIDWDCV RRRFPWSIIL  60
   61 LLGAGFAISD AVRVSGLSSL IACSLNSTIS KMPFFVMQII LSIVVVVMTE FSTNSATASI 120
  121 FIPISFKMAE AVGAHPLYFS IPTAIGPSFS FMLPMATPAN AIVYETKTIR MIDMVSCGVF 180
  181 LNIFCIAITA INMNTWAFWL FNMGTYPDYA LRHATNMTGN SSQCF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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