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View Structure Prediction Details

Protein: CE28467
Organism: Caenorhabditis elegans
Length: 411 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28467.

Description E-value Query
Range
Subject
Range
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ...
Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...
354.0 [0..2] [409..317]

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Predicted Domain #1
Region A:
Residues: [1-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPAPVFPNS RKPATLDANS DEQTLRPYFK TKVEQAEQTV AEKSINVRRL MAQQKELNGK  60
   61 VRLLKEEISH LHEQGSHVGE VCKAMDKKKV LVKNHPDGKY IVDVAASVDI STLAAGTRVA 120
  121 LRADNYAIHE VLPSKVDPLV SLMMVEKVPD STYEMVGGLD TQIKEIKEVI ELPVKHPELF 180
  181 DALGIAQPKG VLLYGPPGTG KTLLARAVAH HTECTFIRVS GSELVQKFIG EGARMVRELF 240
  241 VMAREHAPSI IFMDEIDSIG SSRVEGSRGG DSEVQRTMLE LLNQLDGFEA TKNIKVIMAT 300
  301 NRIDILDSAL LRPGRIDRKI EFPAPDEKAR AQILKIHSRK MNLMRGIRMD KIAEQIPGAS 360
  361 GAEVKSVCTE AGMFALRERR IHVTQEDFEM AVGKVMQKDS EKNMSIKKLW K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.0
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle