YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: snt-1
Organism: Caenorhabditis elegans
Length: 443 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snt-1.

Description E-value Query
Range
Subject
Range
snt-1 - Synaptotagmin status:Confirmed UniProt:P34693 protein_id:AAA98023.1
328.0 [0..1] [443..1]

Back

Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLDFSSQD EENDEDLTKE FVRDEAPMEE TTSEAVKQIA TTTKETLKDV VVNKVIDVKD  60
   61 VVKEKVMQQT GMPEWAFVFL GFVFILLVLA CAFCLIRKLF GKKRHGEKNK KGGLKGFFGK 120
  121 GQDVVDGKNI QGMAQDLEEL GDAMEQNEKE QAEEK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [156-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEVKLGRIQY KLDYDFQQGQ LTVTVIQAED LPGMDMSGTS DPYVKLYLLP EKKKKVETKV  60
   61 HRKTLNPVFN ETFIFKVAFN EITAKTLVFA IYDFDRFSKH DQIGQVLIPL GKIDLGAVIE 120
  121 EWKDIAPPPD DKEAEKSLGD ICFSLRYVPT AGKLTVVILE AKNLKKMDVG GLSDPYVKLE 180
  181 MFGEDRKRLK KKKTNIKRKT LNPYFNESFV FDKLPLHKMK KVSLMITVMD YDKLGSNDAI 240
  241 GRCLLGCNGT GAELRHWMDM LASPRRPIAQ WHTLGPVEEE GDKKDDKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.0
Match: 1dqvA
Description: Synaptogamin I
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle