| Protein: | mdf-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 679 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdf-1.
| Description | E-value | Query Range |
Subject Range |
|
|
253.0 | [0..4] | [678..2072] |
|
Region A: Residues: [1-192] |
1 11 21 31 41 51
| | | | | |
1 MNYDEDIVDE DEYEESEATM LFAEEIKKQF KREFPLKAET EKKLKQATFR RHAPVEARKI 60
61 NFDMTLSPVA PIELASAKKE KESAQRQLVT LREDHERMKQ MMQTNQAKLA EKTIDLETNR 120
121 EKMLELQEQV ELLKQERDDT IAECNRNVDI WTAFGKKYYT WYSMANTQLE SVKLYIDNDG 180
181 KFENDEEVTR LN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [193-538] |
1 11 21 31 41 51
| | | | | |
1 AVPRQMYRAL EQFDYDDETV EELGSGSLLE YEGVSFATRR PPSPETEREI ARADQSAANF 60
61 TLPQSNFTLL EDSNNTIMPE DQTMMTDGCI ANRSLIDYEK DEKIQRLLLE NSVLKDRLNV 120
121 SSGRAERSMI FEERNRTLEF EKKALHKQLD STFSEIEAIR IGQAGNLFNI DEKIPSSSDN 180
181 SAKQLQLIDR ITQLITKNNQ LEKDFEAATS RMTKVMREST DCARRNERLE DAFSSERVRS 240
241 QDLENEKSRL SEQLELSNNE LEKVKKQLEE SQSQLDEVLS MTLTVPASEP ASLPAPTDAG 300
301 NSTQIFHMAS NPLQDAHNEF QASESRKRKL TDAPAGDQWR EQEFAE
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [539-679] |
1 11 21 31 41 51
| | | | | |
1 LEKRLYDCES EKKVLESSYN LHKELSSKFR QVCIALTGLQ IKLKDADEGI CTVQSEYEGG 60
61 SAQQFVFKYF YGTPRIDMLD VSCESTTEML RKWEPLMKKY IGDRNSIPAF LAAMTLQLEQ 120
121 DRDFDETMHE RTHTFSVLHE D
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 2tmaA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
