YRC Public Data Repository - Protein Structure Prediction

Protein:	CE28189
Organism:	Caenorhabditis elegans
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28189.

Description	E-value	Query Range	Subject Range
tr\|M3W5T0\|M3W5T0... - Transmembrane protein 147 OS=Felis catus GN=TMEM147 PE=4 SV=1 TM147_RAT - Transmembrane protein 147 OS=Rattus norvegicus GN=Tmem147 PE=2 SV=1 gi\|57036637 - gi\|57036637\|ref\|XP_533692.1\| PREDICTED: similar to seven transmembrane domain protein isoform 1 [Can... gi\|109124366 - gi\|109124366\|ref\|XP_001095445.1\| PREDICTED: similar to seven transmembrane domain protein [Macaca mu...	300.0	[0..1]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFHFINCF ALAFAPYFIV YKYSGINEYS SIWKCATASG GYLLTQLAKL LIIATFFPAL  60
   61 DSEGFSIVPE FLKSSADIID VIGLHLLMTN FLAGKGEVRF VVGGLGWGFA HSVAHRLVLL 120
  121 WVGARGTAFT WRWVQTSLDS SADLLVIVSL ACLTWMITRT PNKFLVSPIL AMCVFSTFVY 180
  181 QTVQHTFSLY GWSLLAFRFA YSIATAILTV VVYSANRTAS TRKNE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits