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View Structure Prediction Details

Protein: acl-9
Organism: Caenorhabditis elegans
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-9.

Description E-value Query
Range
Subject
Range
gi|157764008 - gi|157764008|ref|XP_001674347.1| Hypothetical protein CBG18941 [Caenorhabditis briggsae AF16]
gi|187024226, gi... - gi|39594308|emb|CAE71886.1| Hypothetical protein CBG18941 [Caenorhabditis briggsae], gi|187024226|em...
277.0 [0..1] [399..1]

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Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLNEPPVL GAGQQIGTRL KGWFFGAAML LSAFFGVLYI VTPLVVLLFL KPRLWRQMLD  60
   61 R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [62-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVGIWVIMPG ALCNYIFGAN IRIKGDFINH EEPALIIMNH RTRLDWLFFW NALYKMDPWL  60
   61 CTTEKISLKG MLKYVPGAGW AMQAASYIFL DRSFDTDKTK LDNILNYYAE TEYKYQLLLF 120
  121 PEGTDKCPKA TERSRIHSEK KGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [205-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHYQYVLHPR VTGFVHIVQA MRRANNIKYI YDVSIGFGDA IVQSELDIFA HGVCPKEVFY  60
   61 QVIKYPIEAI PQTDEALGQW LVNLWRNKEE KLKRFYEMPR NVRQFPDTPD GVEYELDNNT 120
  121 DRAQKGLIGF WCFTTVFWMF MFFESAFMFY WAIIACVFYA AVHKFYGGLE FLAIDRFNHS 180
  181 KQYGVVGQEP EVLNT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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