| Protein: | obr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 627 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for obr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
628.0 | [0..1] | [627..260] |
|
Region A: Residues: [1-232] |
1 11 21 31 41 51
| | | | | |
1 MDRQQWTNSL EYMRHKAITR AESEEDEDAQ MAKTDSNRSD ALILANRQMS GKLCDLRTAA 60
61 NMMNKQGDEL MRALNGTVET DKNSLAERAD LLKMTTSAVL QAAEEFVELS EQSAKRLNKI 120
121 VAVEQKEKAL LQEQLEALAK QHSSLERAAS KCARGAAPVS VYSDQEDDEF HDAEEDLAMP 180
181 CSNSNGPPAT AGVHLTPTKR HIGAGDPSSS TCSDSGAVVV VGAHKGGRQR RT
|
| Detection Method: |  |
| Confidence: | 1.05 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [233-627] |
1 11 21 31 41 51
| | | | | |
1 TVPERPNLPI NLWSIMKNCI GKELSKIPMP VNFSEPISVL QRVTEDLEYA NLLETGAKLS 60
61 TLEQMCYVAA YAASNYSTTC HRTNKPFNPL LGETFEFDRM DDLGWRSVTE QVSHHPPAAA 120
121 HHAEGNGWTM YQDFTMTSRF RGKYLSVIPI GFTHVVFPAT KSHFSYRKIT TTVHNIIVGK 180
181 LWIDNHGDME ITNHETNEKC LLKFVPYSYF SREQPRKVYG IVRDAEGIPK YVVQGTWDKS 240
241 IDMLKVSSWN GNHEKPKLEV DETSLKRIWT ANPLPKNAEK MHNFTKLAIE LNEPEEGVAP 300
301 TDSRLRPDQR LMENGEWDEA NRKKLEIEEK QRVVRRRREA EKELAMKKGD KYEEYEPTWF 360
361 VRVQDESNGA LIHQFKGGYW EAKEQQNWEK CPDIF
|
| Detection Method: | |
| Confidence: | 65.30103 |
| Match: | 1zhtA |
| Description: | Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| sterol binding | 3.12877992228795 | bayes_pls_golite062009 |
| steroid binding | 2.54679035876403 | bayes_pls_golite062009 |
| binding | 1.67154210149282 | bayes_pls_golite062009 |
| lipid binding | 1.46539100663772 | bayes_pls_golite062009 |
| oxysterol binding | 1.1738554488982 | bayes_pls_golite062009 |
| phospholipid binding | 0.0867097353003303 | bayes_pls_golite062009 |
