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View Structure Prediction Details

Protein: CE28112
Organism: Caenorhabditis elegans
Length: 433 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28112.

Description E-value Query
Range
Subject
Range
gi|109469620 - gi|109469620|ref|XP_001078263.1| PREDICTED: similar to quiescin Q6-like 1 [Rattus norvegicus]
461.0 [0..3] [430..227]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNRYPDWPN LGHIAVDSRT TYGQLWDGVP QKANYMAILF EEYDGVGAQF VMDLISRSHI  60
   61 LGARRALSNS PLVQMLNIRN FPTVALFRRD HQQALYMQRY TNQTVKDIDD AITNDMEQGG 120
  121 RRAPILTTTL APVTTTTNTP LIDCHSHPER CRDMYYVSET DMLKAMRMAL LDEVTRVPGA 180
  181 IRGDNFTNLH EFMTLLSNHF PVLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQNDIRRMRA KRTTSVILRN SERARLVFTH MREFLEGRKS IGSVSSDEYR RQFESVERV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [264-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YASPFPVNST WQHCKGSSPM YRGYTCGLWT TFHALTVHTY IDTIKDDYVN PMKPLSTIQG  60
   61 WVKSYFGCEH CRNHFMHMTT TLFPLNERRV RHPHDMMTYL WRAHNIVNNR LHGDSTEDPQ 120
  121 FTKMQFPAPF LCPTCHSGGQ FSRRQIRNFL LRYYGSIKPH NRLADQRLAF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.522879
Match: 1oqcA
Description: Augmenter of liver regeneration
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.090807370772125 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle